PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014255-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

YABBY

Protein Properties

Length: 177aa MW: 19751.4 Da PI: 8.2919

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014255-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203	1.2e-62	6	154	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +se+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+a + q+++ ++ + ++++ n e s+s++ WALNUT_00014255-RA 6 MASERVCYVHCNFCNTTLAVSVPCSSLLTMVTVRCGHCANLLSVNMAASLQAVPPQDT-------------Q--KQQYLINSEDCGSSSKY 81 689****************************************9999999998885.............2..23333333444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ ++e +r pp irPPekrqrvPsaynrfi+eeiqrika+nPdishreafs+aaknWahfP+ih+gl WALNUT_00014255-RA 82 GKLAAFEAV-EHEQSRRPP-IRPPEKRQRVPSAYNRFIREEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHYGL 154 444444333.444555566.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-71	7	154	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	95	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.7E-5	102	148	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSMDMMASER VCYVHCNFCN TTLAVSVPCS SLLTMVTVRC GHCANLLSVN MAASLQAVPP 60 QDTQKQQYLI NSEDCGSSSK YGKLAAFEAV EHEQSRRPPI RPPEKRQRVP SAYNRFIREE 120 IQRIKAGNPD ISHREAFSTA AKNWAHFPHI HYGLKVDDNK QAKLDQTLAG SEGTQNV

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018844482.1	1e-133	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2I4GKQ5	1e-132	A0A2I4GKQ5_JUGRE; putative axial regulator YABBY 2 isoform X1
STRING	VIT_06s0009g00880.t01	1e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-78	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]