PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014430-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ZF-HD

Protein Properties

Length: 244aa MW: 26727.8 Da PI: 7.4385

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014430-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.1	1.8e-32	53	108	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + rY+eClkNhA+ +Ggha+DGCgEfmp+ g egt +alkCaAC+CHRnFHR+e++ WALNUT_00014430-RA 53 RPRYRECLKNHAVGIGGHALDGCGEFMPA-GVEGTLDALKCAACNCHRNFHRKETDG 108 569***********************9.999*******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-22	52	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.1E-30	55	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-29	55	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.243	56	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.29E-19	172	242	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-31	172	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.0E-25	181	237	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEFEDQEEHE EEMELAGASY DSLGNSGRVK MQSSGGGGVG GPELAVAQQQ KGRPRYRECL 60 KNHAVGIGGH ALDGCGEFMP AGVEGTLDAL KCAACNCHRN FHRKETDGHP GAAIGSADPY 120 LQLPHHPQFS PFYRTPSGYL HVAPQQHRPL ALPSTSGGHS REEQEEDVSN PSGGLGGSLS 180 KKRFRTKFTQ EQKDKMLGLA ESLGWRIQKH DEAVVQQFCN ETGVKRHVLK VWMHNNKHTL 240 GKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-27	180	239	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018820987.1	1e-180	PREDICTED: zinc-finger homeodomain protein 1-like isoform X1
Swissprot	Q6YXH5	5e-83	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2I4ENL2	1e-178	A0A2I4ENL2_JUGRE; zinc-finger homeodomain protein 1-like isoform X1
STRING	EMJ06891	1e-114	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-69	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]