PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014446-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 228aa    MW: 26107.4 Da    PI: 11.1475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014446-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.59e-1259105354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ + +Lr++lP++      K++Ka++L ++v+ +++L
  WALNUT_00014446-RA  59 KKHSEAERRRRKRINDQYRTLRSVLPNL-----IKMDKATVLAETVRQVREL 105
                         68*************************9.....6************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.47856105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-959105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-959110No hitNo description
SuperFamilySSF474594.32E-1460119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1460114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1162111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.04E-5144210No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-5145198No hitNo description
CDDcd048735.18E-5146210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MALLRQLEHE MQQFRSNYVS GTYTIQNSFS RGGITTDTTN LRSLFKPKSK AETKQLNAKK  60
HSEAERRRRK RINDQYRTLR SVLPNLIKMD KATVLAETVR QVRELRKTVS DLEAVCHGSN  120
KDCVFPSGVD KLSLERCEDD KGVVKVTFSC EDRTGLMSAV ARQLRAVKGR LVRSKMVTVG  180
GRTKVVLWLQ GLEGGNEGMV MVRRALNEVI DKPILPGIMK MRWRTRRW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820968.11e-168PREDICTED: transcription factor bHLH131-like
TrEMBLA0A2I4ENK31e-167A0A2I4ENK3_JUGRE; transcription factor bHLH131-like
STRINGXP_008235541.15e-80(Prunus mume)
STRINGEMJ077256e-80(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-48bHLH family protein