PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014488-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25653.4 Da    PI: 5.509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014488-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-194195256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ +f++eq++ Le+ Fe++  +  +++ +LA +lgL+ rqV +WFqNrRa++k
  WALNUT_00014488-RA 41 KNKGRFSDEQIKSLESIFESETRLEPRKKVQLAGELGLQPRQVAIWFQNRRARWK 95
                        56678*************************************************9 PP
2HD-ZIP_I/II120.87e-3942133293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k r+s+eq+k+LE+ Fe+e++Lep++Kv+la eLglqprqva+WFqnrRAR+k+kq+E++y++L+++y++l+++ e+L+ke+++L  +l+
  WALNUT_00014488-RA  42 NKGRFSDEQIKSLESIFESETRLEPRKKVQLAGELGLQPRQVAIWFQNRRARWKSKQIEQEYRTLRDNYENLASQFESLKKEKQSLLIQLQ 132
                         689***********************************************************************************99998 PP

         HD-ZIP_I/II  93 e 93 
                         +
  WALNUT_00014488-RA 133 K 133
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-212398IPR009057Homeodomain-like
SuperFamilySSF466895.13E-192698IPR009057Homeodomain-like
PROSITE profilePS5007117.9123797IPR001356Homeobox domain
SMARTSM003891.8E-1839101IPR001356Homeobox domain
PfamPF000466.9E-174195IPR001356Homeobox domain
CDDcd000869.33E-164698No hitNo description
PRINTSPR000319.1E-66877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000319.1E-67793IPR000047Helix-turn-helix motif
PfamPF021831.6E-1497138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEGSEYLYAP AVPEGRYENI TSVQQPVPGL STPRKRKNKN KNKGRFSDEQ IKSLESIFES  60
ETRLEPRKKV QLAGELGLQP RQVAIWFQNR RARWKSKQIE QEYRTLRDNY ENLASQFESL  120
KKEKQSLLIQ LQKLGDLLGK TDDGNGDSKG MEGNNTVGRS DNVSNDIETK ERPSCADEDY  180
KNDLGSFGEE GHGFLNVSEQ HGPLASLEKW YSAYDSGGLL DNSYIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822320.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468979e-50ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2I4ESF11e-164A0A2I4ESF1_JUGRE; homeobox-leucine zipper protein ATHB-12-like
STRINGcassava4.1_015051m2e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.27e-44homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]