PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014618-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YC

Protein Properties

Length: 287aa MW: 31605.8 Da PI: 5.578

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014618-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55	1.8e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++ +v++ ++fdfl ++v r WALNUT_00014618-RA 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREVVSR 86 5789*************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.11E-19	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	6.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REVVSRVPDY GHGHSDAAGD DRIIPKRRKA AADESNESDE 120 ESKKSRMQEM SHAGSSGRGR GRGRGRGRGR GRTAERETSH LDTGPDPSTS IQHSHRQNQN 180 PDTLMENGSE AKEFSKENIA VADGANPAAR NFDLNAHVDE NEGTKTTATA AAAAPASIAG 240 PSTETRHEEL PGWSLSDVDK MAIDPLHLAH LSTRLDEEEE EDYDEED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	8e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGRGRG
2	141	151	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018849378.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A2I4GZR5	0.0	A0A2I4GZR5_JUGRE; dr1-associated corepressor-like isoform X1
STRING	XP_006471322.1	1e-129	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-67	nuclear factor Y, subunit C11