PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014637-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 342aa    MW: 37869.9 Da    PI: 10.1124
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014637-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.6e-1554137186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v  L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ +  ++        s++p++ +l+
  WALNUT_00014637-RA  54 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESSTADP------SSWPLYPRLD 137
                         5*************************************854444555566679*************99988875......4699999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2052137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDKEINQETS SLLPNNNTTT TTIKEDSPRK PFTPPPPAAA APTGGGSDRL KRDEWSEGAV  60
SSLLEAYETK WVLRNRAKLK GHDWEDVARH VSSRANCTKS PKTQTQCKNK IESMKKRYRS  120
ESSTADPSSW PLYPRLDLLL RGSGPLQVSP PPPTPTPASH PPPPNAPLML LEPSPVAVQP  180
PPPPPLPPPP PQLGVAQNSH GSNGIDRVAK EDGAGTKLSD QESDKNHMET DSSTPALYSD  240
KDKSRSKKMK MKMEKKKKSR RRPEESEVAE SIRWLAEVVV RSEQARMETM REIERMRVEA  300
EAKRGEMDLK RTEILANTQL EIARLFAGIG KGVDSSLRIG RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246262KKMKMKMEKKKKSRRRP
2253262EKKKKSRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849414.10.0PREDICTED: zinc finger homeobox protein 4-like
TrEMBLA0A2I4GZU60.0A0A2I4GZU6_JUGRE; zinc finger homeobox protein 4-like
STRINGXP_010067722.11e-155(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-92sequence-specific DNA binding transcription factors