PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014665-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 471aa MW: 51598.6 Da PI: 8.1971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014665-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H WALNUT_00014665-RA 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	15	7.3e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++++ WALNUT_00014665-RA 137 WKCDKCSKKYAVQSDWKAHQKSC 159 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.0E-8	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.4E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	70	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.0E-5	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.0E-8	132	157	No hit	No description
SMART	SM00355	94	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MSNITGDEGS FSSGNSGEEV HQEKKKQQLQ HPLDGSSSGL SDPSAEVIAL SPTTLMATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSTEVRKR VYICPESTCV HNNPARALGD 120 LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHQKSCG TREYKCDCGT IFSRRDSFIT 180 HRAFCDALAE ENNKVNQELI NNNGSNIQAQ MPELMSSMPM NMTTNTSING ASNFNNSDHK 240 NQLKSLSQDP VLSMPSFKPM NMTGGMFSTS SGTLFGGPRT SSSSSLQLSS NSSSGPFHHL 300 LESKNGCQIF GSAHMSATAL LQKAAQIGAT ASSSTINSPM MHKSFAGSMA GHDHQHSSSI 360 RPPYTSAIQQ HSTAYDHFQS EPDQANLVGM NDGGGFMTTQ LLQKGPQEIS QIFDASGTGS 420 SMNDVMLSQM LMGGDQNQGF IRHMEQEEQG RTCINGAWGD HGSPQKFIEL L

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MSNITGDEGS FSSGNSGEEV HQEKKKQQLQ HPLDGSSSGL SDPSAEVIAL SPTTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSTEVRKR VYICPESTCV HNNPARALGD  120
LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHQKSCG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ENNKVNQELI NNNGSNIQAQ MPELMSSMPM NMTTNTSING ASNFNNSDHK  240
NQLKSLSQDP VLSMPSFKPM NMTGGMFSTS SGTLFGGPRT SSSSSLQLSS NSSSGPFHHL  300
LESKNGCQIF GSAHMSATAL LQKAAQIGAT ASSSTINSPM MHKSFAGSMA GHDHQHSSSI  360
RPPYTSAIQQ HSTAYDHFQS EPDQANLVGM NDGGGFMTTQ LLQKGPQEIS QIFDASGTGS  420
SMNDVMLSQM LMGGDQNQGF IRHMEQEEQG RTCINGAWGD HGSPQKFIEL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-35	133	203	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-35	133	203	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018829900.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-104	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2I4FE21	0.0	A0A2I4FE21_JUGRE; protein indeterminate-domain 2-like
STRING	XP_007163083.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	7e-89	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]