PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014689-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 326aa    MW: 36980 Da    PI: 8.7745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014689-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05165184120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  WALNUT_00014689-RA 165 FACSICSKTFNRYNNMQMHM 184
                         78*****************9 PP
2zf-C2H216.62.2e-05249271123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +CgksF  k + ++H +++
  WALNUT_00014689-RA 249 FMCRKCGKSFAVKGDWRTHEKNC 271
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-5156188No hitNo description
PROSITE profilePS5015710.45165192IPR007087Zinc finger, C2H2
SMARTSM003550.17165187IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5165184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-4165184IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SMARTSM00355190212244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.17E-6235269No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6245269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787249269IPR007087Zinc finger, C2H2
SMARTSM0035537249269IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSLMADLHIV SDKNLCFQSP TFIEWLKPSP SSSSSSSSSS SSSSYSFSEN SKDFVQETMQ  60
CLPLLSRFAV TKTLKEEEDM GLRKENSANI KEEKVNEKVT VALHIGLPNW GDSNHADQKK  120
NYDLQLKKED DHQAAKKSFY GCSFNAESRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM  180
QMHMWGHGSE FRKGPDSLKG TQPAAMLRLP CYCCALGCKN NINHPRAKPL KDFRTLQTHY  240
KRKHGAKPFM CRKCGKSFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH  300
YPHPSLEGFE DDKECITGSE DEFAAP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826532.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2I4F4G70.0A0A2I4F4G7_JUGRE; zinc finger protein WIP3-like
STRINGEOY334691e-171(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]