PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014706-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 502aa    MW: 55663.1 Da    PI: 8.7222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014706-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011931123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k++s+   L  HirtH
  WALNUT_00014706-RA  9 FVCKFCNKRYSSGKALGGHIRTH 31
                        89********************9 PP
2zf-C2H210.90.0014436458123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C ++F++   L  H r+H
  WALNUT_00014706-RA 436 HECPICFRVFRSGQALGGHKRSH 458
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-6636No hitNo description
Gene3DG3DSA:3.30.160.604.3E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949936IPR007087Zinc finger, C2H2
PfamPF139123.7E-7932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.88997124IPR007087Zinc finger, C2H2
SMARTSM003550.5697119IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.07E-898119No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139121.9E-699121IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-8349376No hitNo description
SMARTSM003550.079354376IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681354377IPR007087Zinc finger, C2H2
PfamPF139120.042354376IPR007087Zinc finger, C2H2
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037436458IPR007087Zinc finger, C2H2
SMARTSM003550.17436458IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-10436458IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEEKQRKKFV CKFCNKRYSS GKALGGHIRT HMNENSAEKE AEGNGKGMKF PSMDGGSKNK  60
RDSGSETGGW NSSYGLREKP KRTRWFVDSS SSSLHERFCK ECGKGFQSLK ALCGHMACHS  120
EKEKMNENQK PEIDSQSVIG TSASGKLRRS NRTRYKTLDD YPLANGSSSV SEIEQEQEEA  180
AMCLMMFSRD SGCRAGFSSV VEYSNNNSVV LEAKSSSIEV KITMKNGGNY ASDMNQSVKL  240
KKQRDELKTS EISFSDNSDS GYFKNGPKKA ESDVSVDGSL TSGELKKPKV EYRSGAGGFN  300
AELAKTSNRF NCVTSEFGGL LRNEGCDQVG RAFVVGNSRM RTKNGSYAQK RKKYECENCD  360
MFFHSRRALG AHRASHTQIN GCWESMYDRG ENNTDTDHSL PLPKHCSKTL ESCGVKISNN  420
QSISGHSGKP KKSKGHECPI CFRVFRSGQA LGGHKRSHFY GGSEEKTIII EQELPEFPGL  480
IDLNLPAPIE EEADGQAEFM PW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818453.10.0PREDICTED: zinc finger protein 37-like isoform X1
TrEMBLA0A2I4EGC30.0A0A2I4EGC3_JUGRE; zinc finger protein 37-like isoform X1
STRINGEOY017461e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-75C2H2-like zinc finger protein