PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014732-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7924.05 Da    PI: 10.5411
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014732-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.3e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  WALNUT_00014732-RA  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVGLIVFSNKGKLFEYST 59
                        79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.071161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-30263IPR002100Transcription factor, MADS-box
CDDcd002653.33E-35259No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-32323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVGLIVFSN KGKLFEYSTD  60
SWYSSTSDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21160161MEF2C
5f28_B8e-21160161MEF2C
5f28_C8e-21160161MEF2C
5f28_D8e-21160161MEF2C
6byy_A9e-21160161MEF2 CHIMERA
6byy_B9e-21160161MEF2 CHIMERA
6byy_C9e-21160161MEF2 CHIMERA
6byy_D9e-21160161MEF2 CHIMERA
6bz1_A9e-21160161MEF2 CHIMERA
6bz1_B9e-21160161MEF2 CHIMERA
6bz1_C9e-21160161MEF2 CHIMERA
6bz1_D9e-21160161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818517.15e-36PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_027773500.13e-36agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotO223282e-35AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2J6K7R05e-37A0A2J6K7R0_LACSA; Uncharacterized protein
TrEMBLA0A438E3833e-37A0A438E383_VITVI; Agamous-like MADS-box protein AGL8
STRINGXP_004172815.12e-37(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-33AGAMOUS-like 8