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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
WALNUT_00014774-RA |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family |
BBR-BPC |
| Protein Properties |
Length: 291aa MW: 32540.4 Da PI: 10.1265 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00014774-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 346.7 | 5.3e-106 | 12 | 291 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlal.sekkaavaerd.........maflqrdkalaernkalver 77
mddd+ + rn+gyyep+ +k +lglqlms++a+rd+k r+ n + + ++++++rd m++ rd++ ++
WALNUT_00014774-RA 12 MDDDALNMRNWGYYEPS--FKGHLGLQLMSTMADRDTKHflpgRDPNSIMvNTANGTFHPRDcvvseapvpMNY-VRDSWANQ-------- 91
9***9999*******99..************************888875515678899************99*9.999**999........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
++k+l++l+++ +++vl++t+ ++slq q +d++++ e+ ++ e++ +++e ++kkrq++ pk+++akk++
WALNUT_00014774-RA 92 RDKFLNMLPANP--------NYGVLPETSGAHSLQI---LQPQDPSMD--ERM----VKV-EEPLVKSEGGQMKKRQSGGAPKTPRAKKPR 164
789******665........49***********999...445555555..322....222.234556677888889999********9999 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
k ++++++++ +r+k kk++d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
WALNUT_00014774-RA 165 K----PRDNNNPSV--QRVKPVKKNMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSIYPLPMSTKRRGARIAGRK 249
9....434444444..69************************************************************************* PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLaa+Gy++snp+DL++hWA+HGtnkfvtir
WALNUT_00014774-RA 250 MSQGAFKKVLEKLAADGYNFSNPIDLRTHWARHGTNKFVTIR 291
*****************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MVAFFAPFVV LMDDDALNMR NWGYYEPSFK GHLGLQLMST MADRDTKHFL PGRDPNSIMV 60
NTANGTFHPR DCVVSEAPVP MNYVRDSWAN QRDKFLNMLP ANPNYGVLPE TSGAHSLQIL 120
QPQDPSMDER MVKVEEPLVK SEGGQMKKRQ SGGAPKTPRA KKPRKPRDNN NPSVQRVKPV 180
KKNMDVVING IDMDISGIPI PVCSCTGTPQ QCYRWGCGGW QSACCTTNVS IYPLPMSTKR 240
RGARIAGRKM SQGAFKKVLE KLAADGYNFS NPIDLRTHWA RHGTNKFVTI R
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
