PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015075-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 490aa    MW: 54585.2 Da    PI: 5.6621
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015075-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.3e-35231132101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d++++e++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F k++k+
  WALNUT_00015075-RA  23 FLIKTYDMVDDSATDEIVSWSSHKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFVKDHKH 104
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  WALNUT_00015075-RA 105 LLKNIHRRK 113
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.3E-3819112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-3519112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.6E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDGAPTTSGS GVGAGAGGGP APFLIKTYDM VDDSATDEIV SWSSHKNSFV VWNPPEFARL  60
LLPTYFKHNN FSSFIRQLNT YGFRKVDPEK WEFANEDFVK DHKHLLKNIH RRKPIHSHSN  120
PQGSVVDPER AVLDEEIERL LREKAVLEEN VLRSKQQQSA AKLQFKELKQ QVDNMEQRQE  180
NLLTSLKKAL QNPTFGEILA QRIESMDFLA YNKKRRLPQV DQSQPVVENS FLDNQSSSRE  240
FGNVFHQDFS NKLRLELSPA VSDINLVSHS TQSSNEDGGG SQKKVSVERK GSQMRTEGFG  300
FPLETLELSD TGTSFNLNMD STLSRKMSTN EGPRLHSSQP SLASNEEGDN HISFHLNLTL  360
ASSPLQVNRS RYSASRMPQV VEGIRESPDS KSNANDKESD TLAFPLSRNQ ANDTALSSSQ  420
RAPNNNEEPA AAPARPNDGF WEQFLTERPG CSDNEEASSA YKAYPYEGQD DGGSGVGMSR  480
NAKSVEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-211211216129Heat shock factor protein 1
5d5v_B6e-211211216129Heat shock factor protein 1
5d5v_D6e-211211216129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848541.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ51e-161HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A2I4GXA40.0A0A2I4GXA4_JUGRE; heat stress transcription factor A-5
STRINGXP_008222805.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-157HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]