PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015301-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 214aa    MW: 23799.5 Da    PI: 7.3859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015301-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.74.4e-3416108193
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++r+kC+++Cvlapyf a+++++f++vhk+FG+ nv+k++k+ +ee+r++a++sl++eA +r++dP+ G++g ++k+  +l+  k
  WALNUT_00015301-RA  16 ACAACKHQRKKCTEECVLAPYFTADRRREFEAVHKVFGVGNVTKIVKSQREEDRKIAVDSLIWEASCRQKDPILGSYGEYRKVYDELNLCK 106
                         7*********************************************************************************999988776 PP

              DUF260  92 ae 93 
                          +
  WALNUT_00015301-RA 107 RQ 108
                         55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.98815116IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3216108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQGENIEGSA GTTHPACAAC KHQRKKCTEE CVLAPYFTAD RRREFEAVHK VFGVGNVTKI  60
VKSQREEDRK IAVDSLIWEA SCRQKDPILG SYGEYRKVYD ELNLCKRQNY QNQVMQLSGQ  120
WGSTTGYKAA PGLNIGWSAG SNGINNKGLN INSLSCIHDN EQYGIVDPSN PYSYTALNYE  180
DRAAKQENHG GGVPLMQQNS IDGLINQQYY VPGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-1917931288LOB family transfactor Ramosa2.1
5ly0_B6e-1917931288LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824456.11e-160PREDICTED: LOB domain-containing protein 2-like
SwissprotQ9LNB94e-40LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A2I4EYI81e-159A0A2I4EYI8_JUGRE; LOB domain-containing protein 2-like
STRINGXP_008377048.15e-52(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-42LOB domain-containing protein 2