PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015335-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 257aa    MW: 28856.5 Da    PI: 7.5235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015335-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601071.5e-3319116198
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCa+C+++r+kC + C +apyfpa+ +++f+ vh++FG+ nv+k+l +l+ ++re a++s+ +eA ++ +dPv+G +g +++l+q+l+ l+
  WALNUT_00015335-RA  19 ACASCRHQRKKCDNTCLMAPYFPAHMAENFQTVHRVFGVGNVSKILMNLDVQHRELAAESIKWEAAIWRQDPVHGPLGKYRQLEQELQLLR 109
                         7*****************************************************************************************9 PP

              DUF260  92 aelallk 98 
                         ++l +++
  WALNUT_00015335-RA 110 NQLITQE 116
                         9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.48918119IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3219114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSMPRGRAEE PCSSNYRHAC ASCRHQRKKC DNTCLMAPYF PAHMAENFQT VHRVFGVGNV  60
SKILMNLDVQ HRELAAESIK WEAAIWRQDP VHGPLGKYRQ LEQELQLLRN QLITQEKILN  120
QWSIYSSNQS EVGMMLPSSE GGLNSGLTCS LQGEQEIESQ GVVSCTGIPY NTEGVGNFGT  180
AQQPQPAVGS CSMGQGQPRR NQAGNHMAMT YRSDRGMLQF GLTPHHHVNP LLSKDLDCLR  240
YQWNLQSTDW NSNLHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-182011212104LOB family transfactor Ramosa2.1
5ly0_B1e-182011212104LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838459.11e-126PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A2I4G3H01e-125A0A2I4G3H0_JUGRE; LOB domain-containing protein 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-26LOB domain-containing protein 2