PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015424-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family RAV
Protein Properties Length: 311aa    MW: 35158.8 Da    PI: 9.5326
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015424-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.8e-133785155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+ykGV   + +grW A+++d      ++r++lg+f+ +e Aa a++ a+++++g
  WALNUT_00015424-RA 37 SKYKGVVPQP-NGRWGAQLYDK-----HQRVWLGTFDEEEHAAHAYDIAALRFRG 85
                        89****9888.8*********3.....5*************************98 PP
2B3955e-30169269197
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv tpsdv+k++r+v+pk++ae++     ++ ++++ l led   ++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD v F+++g+
  WALNUT_00015424-RA 169 FEKVVTPSDVGKLNRMVIPKQHAEKYfplpIESAAKGVLLNLEDDARKVWRFRYCYWSSSQSYVLTKGWTRFVKEKNLKAGDRVSFQRSGE 259
                         99**************************9944567999*************************************************9998 PP

                         SEE..EEEEE CS
                  B3  88 sefelvvkvf 97 
                            +l+++ +
  WALNUT_00015424-RA 260 PANKLFIGCR 269
                         8888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-173795IPR016177DNA-binding domain
PfamPF008477.8E-83785IPR001471AP2/ERF domain
CDDcd000181.85E-243795No hitNo description
Gene3DG3DSA:3.30.730.105.7E-213893IPR001471AP2/ERF domain
SMARTSM003802.1E-273899IPR001471AP2/ERF domain
PROSITE profilePS5103220.2713893IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-39165271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-29166269IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-28167260No hitNo description
PfamPF023623.7E-27169269IPR003340B3 DNA binding domain
SMARTSM010192.4E-25169271IPR003340B3 DNA binding domain
PROSITE profilePS5086314.029169272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKKSLELSCQ EGLVSRAVSN SESIGRFEAE SKKLPSSKYK GVVPQPNGRW GAQLYDKHQR  60
VWLGTFDEEE HAAHAYDIAA LRFRGNNAIT NFKLSLDGNK DVVELYFLNS HSKDEIVDML  120
RKHSYACELE QTRYNISACT GTRKTTKSNG EFEDTPGSDP FDVARKHLFE KVVTPSDVGK  180
LNRMVIPKQH AEKYFPLPIE SAAKGVLLNL EDDARKVWRF RYCYWSSSQS YVLTKGWTRF  240
VKEKNLKAGD RVSFQRSGEP ANKLFIGCRP QKGSSLVGMS DQENSSKSVE ATRLIRLFGV  300
NILEAPANHV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4716827613122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815429.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-108RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2I4E7Q90.0A0A2I4E7Q9_JUGRE; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_010265251.11e-121(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-110related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]