PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015425-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 349aa    MW: 39612.5 Da    PI: 9.6045
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015425-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.31.1e-41932372133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa............secea 75 
                         ++kkd+ ski+T++g+RdRRvRls  +a++fFdLqd+LGfdk+s+t++WLl ++ +aik+ ++      +  ++            +    
  WALNUT_00015425-RA  93 PVKKDQRSKIYTSQGLRDRRVRLSTGIARKFFDLQDMLGFDKASQTVDWLLSKSRKAIKDVAQMnrfssP--TSghevisginidvN---- 177
                         68**************************************************************655331..222222222211111.... PP

                 TCP  76 esssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                  +s +              ++++ + ++ k+aas + l+kesrakar+rarertrek ++ 
  WALNUT_00015425-RA 178 ---------DSGNlegrvsksrslLGVSKEKVKMERVKKAASIHLLSKESRAKARERARERTREKICNG 237
                         .........22223444555556644444445666777777799**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3794235IPR005333Transcription factor, TCP
PROSITE profilePS5136930.74195153IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.211216233IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFSSTNSLNP PSHYYPSSSC HYFPSPFPNH EFDGIFHNEQ HHDQLAGRFL TTNYAPIFPE  60
NVSFAVSRYP TMTMQNNGEY YSSSISNFLA EKPVKKDQRS KIYTSQGLRD RRVRLSTGIA  120
RKFFDLQDML GFDKASQTVD WLLSKSRKAI KDVAQMNRFS SPTSGHEVIS GINIDVNDSG  180
NLEGRVSKSR SLLGVSKEKV KMERVKKAAS IHLLSKESRA KARERARERT REKICNGRLH  240
ESKKLDAGST QIVQQYLRSQ SDQLEACIRS SYKVVGEIEV LSSHLIADRD PGASISDESF  300
VIRRNLKPSE ILNYQPNLMI SKDLSSNNEN SNYFPNLGLT WDIDNTVEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815432.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A2I4E7Q50.0A0A2I4E7Q5_JUGRE; transcription factor CYCLOIDEA-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-28TCP family protein