PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015436-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 394aa    MW: 43815.8 Da    PI: 6.6935
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015436-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.51.1e-3990166278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls +++y+rrh+vCe hsk+pvv+v g+eqrfCqqCsrfh+l efD+ krsCr+rL++hn rrrk+q+
  WALNUT_00015436-RA  90 CLVDGCKSDLSICRDYYRRHRVCERHSKTPVVIVGGKEQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNLRRRKSQP 166
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3284151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.38587164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3788169IPR004333Transcription factor, SBP-box
PfamPF031104.7E-3090163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MLAMDWDWND FAWDSIELEE KEDNSSFAGL VGPGSLGGQD NNNNNNGGGI MVDLKLRGIS  60
GLEERSVDGL KYRGPLKRTR VMSGTQNVSC LVDGCKSDLS ICRDYYRRHR VCERHSKTPV  120
VIVGGKEQRF CQQCSRFHSL GEFDDVKRSC RKRLDGHNLR RRKSQPEPLY LSSEEFRSSY  180
KGSRILQFSN PHIYATTSLR GTWPGTVSSE AQAMVHNHYR GLRITEGQSI PNSFAVIYNE  240
ENKMFSFLQE NGPKLCSQTT PEASIHQPLS NSIVSAESGR GGHSMLSGGP TQPIDLGYAL  300
YLLSSHPTQT SAMDLSHLVR SSVSHPSQSI SSAQQLDEVS QYSCSHGIKD KSAAGLVLLP  360
DSNETNFYCN GVFQEAFDAL FESEASPTLP IWWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-24901631184squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815419.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_018815420.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A2I4E7Q70.0A0A2I4E7Q7_JUGRE; teosinte glume architecture 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-44SBP family protein