PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015566-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 158aa    MW: 16852.1 Da    PI: 7.414
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015566-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26051.23.7e-1614644898
              DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                        +++e++r d+++slvyeA+ r+rdP++G++g i++lqqq+++l+ el++++
  WALNUT_00015566-RA 14 EVSESQRADVANSLVYEANLRLRDPIHGCMGAISALQQQIQSLQGELNEVR 64
                        67999******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.571167IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-141464IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MQPILACLNV QRAEVSESQR ADVANSLVYE ANLRLRDPIH GCMGAISALQ QQIQSLQGEL  60
NEVRTLMMRH KFREVIGNNI SSSTTTAADL VSSRVPAVSI ASAPPPQTLP PQPVLSPLPF  120
AVPSLSSSSS SSSLYTPRPA STTGYSSIIL SGNVPYFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092113.16e-39LOB domain-containing protein 15-like
TrEMBLA0A2I4F9X33e-35A0A2I4F9X3_JUGRE; LOB domain-containing protein 15-like
STRINGSolyc06g007390.2.12e-32(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-17LOB domain-containing protein 13