PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015577-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 113aa MW: 13114.2 Da PI: 10.7226

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015577-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.1	2.3e-29	14	91	51	128
NAM 51 vka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +e ++y F++rd+ky++g+r+nra+ +gyWkatg d++++s +g+ vg +k Lvfy g+apkg+kt+W+mhe+r+ WALNUT_00015577-RA 14 YKDyQEGQLYIFTPRDRKYRNGRRPNRAAGDGYWKATGADRKIKS-NGTIVGYRKALVFYIGKAPKGKKTNWIMHEFRV 91 333245589**********************************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.488	1	112	IPR003441	NAC domain
SuperFamily	SSF101941	1.14E-32	10	106	IPR003441	NAC domain
Pfam	PF02365	3.2E-13	22	91	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MKVTLEFLPL TAKYKDYQEG QLYIFTPRDR KYRNGRRPNR AAGDGYWKAT GADRKIKSNG 60 TIVGYRKALV FYIGKAPKGK KTNWIMHEFR VKDSPCSERG SNGMKVCRFS SFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	17	109	68	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	17	109	68	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	17	109	68	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	17	109	68	162	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	17	109	71	165	NAC domain-containing protein 19
3swm_B	2e-32	17	109	71	165	NAC domain-containing protein 19
3swm_C	2e-32	17	109	71	165	NAC domain-containing protein 19
3swm_D	2e-32	17	109	71	165	NAC domain-containing protein 19
3swp_A	2e-32	17	109	71	165	NAC domain-containing protein 19
3swp_B	2e-32	17	109	71	165	NAC domain-containing protein 19
3swp_C	2e-32	17	109	71	165	NAC domain-containing protein 19
3swp_D	2e-32	17	109	71	165	NAC domain-containing protein 19
4dul_A	2e-32	17	109	68	162	NAC domain-containing protein 19
4dul_B	2e-32	17	109	68	162	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269\|PubMed:25005917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269\|PubMed:25005917}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831763.1	5e-65	PREDICTED: NAC domain-containing protein 68-like
Swissprot	Q9SQL0	2e-32	JA2_SOLLC; NAC domain-containing protein JA2
TrEMBL	A0A2I4FJE2	1e-63	A0A2I4FJE2_JUGRE; NAC domain-containing protein 68-like
STRING	XP_008227355.1	2e-41	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	3e-33	NAC domain containing protein 19

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]