PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015730-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 277aa    MW: 31168.9 Da    PI: 8.0522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015730-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05104123120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k F+r  n++ H+
  WALNUT_00015730-RA 104 FSCTVCNKKFNRYNNMQMHM 123
                         89*****************9 PP
2zf-C2H213.20.00027191211323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F  + + k+H +++
  WALNUT_00015730-RA 191 CQKCGKAFAVRGDWKTHEKNC 211
                         *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-597126No hitNo description
SMARTSM003550.09104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616104131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-6104123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SMARTSM00355100152184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.74E-7174209No hitNo description
Gene3DG3DSA:3.30.160.605.0E-6176209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355220189209IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MHSPTFTYTS TSESAIWEAD ENSIFLSLGP PGPHNRKNPF YIPYSNHHVP HQIPSSVGGT  60
ASVALHVGPP SGPSSSNPDE IAVPVEGQYW IPSPAQILAG PTQFSCTVCN KKFNRYNNMQ  120
MHMWAHGSQY RKGPESLRGS KPTSSILKLP CYCCTEGCKN NIEHPRSKPL KDFRTLQTHY  180
KRMHGVKPYW CQKCGKAFAV RGDWKTHEKN CGKLWFCICG SNFKHKRSLK DHVKAFGDGH  240
APHSTRELCE VEEEEEDDDD DHGTENENRG HGSVFFK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835878.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-113ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2I4FW480.0A0A2I4FW48_JUGRE; zinc finger protein WIP6
STRINGVIT_01s0011g03100.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein