PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015735-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 503aa    MW: 55802.9 Da    PI: 8.3596
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015735-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.31.1e-451262742134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 
                         +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++ +ai elt++ s  ++ c+++++s+s+ ++s+     
  WALNUT_00015735-RA 126 TGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSRTAITELTESISHVKQTCSDGAKSVSVTSDSEVvsen 216
                         79**************************************************************555555564444444444333334455 PP

                 TCP  89 ............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                      a  ++ ++  ++k + + + +a++sr+karararertr+km+i+ 
  WALNUT_00015735-RA 217 veiasdgdqrgfCADVESFNRVATEKTNRKLHIVARDSRNKARARARERTRKKMMIRG 274
                         556666777777444444455555555555567788*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-43126271IPR005333Transcription factor, TCP
PROSITE profilePS5136936.409128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.504252269IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MFPRSSSDQG PFIYTSPSIL EKPFANNEKT SSGQDQEHPS SYSHLSAPFF EDDELFFSHF  60
LSQQKLFVCS NSQAEIENSV AATDKATDNR KEACSNTVAE QIPSKRKFPN KKSIGDAKPT  120
GPRKRTGKKD RHSKICTAQG PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFSKSR  180
TAITELTESI SHVKQTCSDG AKSVSVTSDS EVVSENVEIA SDGDQRGFCA DVESFNRVAT  240
EKTNRKLHIV ARDSRNKARA RARERTRKKM MIRGHEVSTE ISVGPNPNNS NLVRLCSSSP  300
QLETGNQESY FPSQNMKSSP KIVAEVEERC SHLLGHQIDS VCINENFLGI VGAPTSSNLV  360
LNDSRNDLAA SSGGNTEEDF PGFPVNLSSN SNNNANMQSF CCTTSTNTKS STGNVQLRIP  420
SAMGTSKSHE LKHTSIFMTT YNTQEQIMLN SIFRSSTPNI QDQNRSSIFF TSLNTQRENP  480
STNFLATSIN NCLQSHFLGN EFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256268KARARARERTRKK
2261269ARERTRKKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835934.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A2I4FWA60.0A0A2I4FWA6_JUGRE; transcription factor TCP12-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-33TCP domain protein 12