PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015778-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 485aa    MW: 55134.8 Da    PI: 4.6824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015778-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.53.9e-781204782373
                GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                         ++lLl  Aeav++++  la++++a+l++l    ++g +++++la +ft++L+ r ++ ++e+ ++l +++t+      ++aa+++++e+sP
  WALNUT_00015778-RA 120 TDLLLMGAEAVEDQNWLLASTIIAKLNNLllDRENGdNSFHKLAMFFTQGLHYRTTN-TTEMHHKLLSRQTN------TTAAFQMLQELSP 203
                         689999**********************9885555559******************9.77777777777765......68899******** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++kf+h+taNqaIlea +ge +vH+iDfdi++G+QWp+L+  La R++   s+++T+++  +++++  +++tg+rL++fA+ +++pf  + 
  WALNUT_00015778-RA 204 CVKFAHFTANQAILEASQGEGEVHVIDFDIMEGMQWPPLMVDLAMRKDA--SFKVTAIVV-DQENAAIVHQTGRRLKEFADLINLPFTLDQ 291
                         **********************************************765..9*******9.5579999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysal 267
                         +v+++ ed+     r+k g +l+ n++++  ++  +s s+    +++L  v +lsPk+vv+ve+e    a  +s sF+e f+eal++y+a+
  WALNUT_00015778-RA 292 MVMEKEEDF----ARIKVGRTLIANCMMHRLQMQTRSFST---VNTFLAGVSRLSPKIVVLVEEElynfARISSMSFVEFFCEALHHYAAF 375
                         999988877....4567799*******9555555555555...55********************88766779****************** PP

                GRAS 268 fdsl..eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveees 355
                          dsl  +++ +  ++e + +E+e+lg +i + + +   e     e+ + W + ++   GFkp+p+s  + +qak+l++ ++  gy v++e+
  WALNUT_00015778-RA 376 SDSLaiSSSCGGYKSELRLIEKEFLGIRILDSLRQFPYE-----EERMLWGNGFGYlKGFKPIPISFCNISQAKYLVSLFS-GGYWVKHEN 460
                         ****6667777888*******************999998.....55667*****9758***********************.89******* PP

                GRAS 356 gslvlgWkdrpLvsvSaW 373
                           l l+Wk+rpL+++S W
  WALNUT_00015778-RA 461 CRLALCWKSRPLTTASIW 478
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.31693460IPR005202Transcription factor GRAS
PfamPF035141.4E-75120478IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MENEQFCFPF SPSYYDGLHD GSLETSYSLQ TGDPFSPNTM QGGIFACSDM ERLFQTEREL  60
VNIDSIYQDT SETRLEGVVE TELGCELNQD EEEQVGVLTD GNSPLKIIQE DQLMEDSSLT  120
DLLLMGAEAV EDQNWLLAST IIAKLNNLLL DRENGDNSFH KLAMFFTQGL HYRTTNTTEM  180
HHKLLSRQTN TTAAFQMLQE LSPCVKFAHF TANQAILEAS QGEGEVHVID FDIMEGMQWP  240
PLMVDLAMRK DASFKVTAIV VDQENAAIVH QTGRRLKEFA DLINLPFTLD QMVMEKEEDF  300
ARIKVGRTLI ANCMMHRLQM QTRSFSTVNT FLAGVSRLSP KIVVLVEEEL YNFARISSMS  360
FVEFFCEALH HYAAFSDSLA ISSSCGGYKS ELRLIEKEFL GIRILDSLRQ FPYEEERMLW  420
GNGFGYLKGF KPIPISFCNI SQAKYLVSLF SGGYWVKHEN CRLALCWKSR PLTTASIWVP  480
KSKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3912748227382Protein SCARECROW
5b3h_A1e-3912748226381Protein SCARECROW
5b3h_D1e-3912748226381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814922.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4E6910.0A0A2I4E691_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGPOPTR_0019s02540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-48GRAS family protein