PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015813-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21459.8 Da    PI: 10.1119
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015813-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.4e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss  klye++s
  WALNUT_00015813-RA  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSGAKLYEFCS 59
                        79***********************************************96 PP
2K-box92.47.5e-3181171999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          + a +++++qe+  Lk+++e Lqr+qR+llGedLe+L +keL q e+qL+ slk+iRs+K +++l+q+ +lqkke +l e+nkaLr+kl+
  WALNUT_00015813-RA  81 SQPAAHQRSYQEYIMLKAKVEVLQRSQRNLLGEDLENLGVKELDQHEHQLDASLKQIRSRKLQFMLDQVFDLQKKETMLLETNKALRRKLQ 171
                         4567799*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-34287IPR002100Transcription factor, MADS-box
CDDcd002651.65E-40279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2681171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.24786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS GAKLYEFCSS  60
SSMTKTLDRY RSCSYETRQA SQPAAHQRSY QEYIMLKAKV EVLQRSQRNL LGEDLENLGV  120
KELDQHEHQL DASLKQIRSR KLQFMLDQVF DLQKKETMLL ETNKALRRKL QCRSFGDKSG  180
KCCNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-268417015101Developmental protein SEPALLATA 3
4ox0_B6e-268417015101Developmental protein SEPALLATA 3
4ox0_C6e-268417015101Developmental protein SEPALLATA 3
4ox0_D6e-268417015101Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankU789471e-50U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852400.11e-120PREDICTED: MADS-box protein CMB1-like
SwissprotQ396853e-84CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A2I4H8D51e-118A0A2I4H8D5_JUGRE; MADS-box protein CMB1-like
STRINGVIT_01s0011g00110.t017e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-80MIKC_MADS family protein