PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015814-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28354.4 Da    PI: 9.3006
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015814-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k ienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl ey++
  WALNUT_00015814-RA  9 KLIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVGLIVFSHKGKLSEYAT 59
                        569**********************************************86 PP
2K-box81.61.8e-2779168593
               K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         + +  ++++ + +++ e+++Lk++ie Lqr++R++lG+dLesLs+keLq+LeqqL+ +lk+iRskK++ + eq + l kk ke ++++ a
  WALNUT_00015814-RA  79 QVVGsTDSEFQGNWTMEFSRLKAKIELLQRNHRRYLGDDLESLSFKELQNLEQQLDVALKHIRSKKEKTIQEQNSILAKKIKEKEKITVA 168
                         4444355566779*******************************************************************9998887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-37160IPR002100Transcription factor, MADS-box
CDDcd002657.11E-40279No hitNo description
SuperFamilySSF554556.41E-32279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.94489179IPR002487Transcription factor, K-box
PfamPF014865.0E-2189164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQMKL IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVGLIVFSH KGKLSEYATG  60
SCMENILERY ESYSYAEKQV VGSTDSEFQG NWTMEFSRLK AKIELLQRNH RRYLGDDLES  120
LSFKELQNLE QQLDVALKHI RSKKEKTIQE QNSILAKKIK EKEKITVAQQ ARWEQQNLHG  180
PDGSSSTFLL PQPLPCLNIG GTNYQEDRSE MRRNVELDLT LLNQFIPVTT DALPRELIRE  240
QRYNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18174173MEF2 CHIMERA
6byy_B2e-18174173MEF2 CHIMERA
6byy_C2e-18174173MEF2 CHIMERA
6byy_D2e-18174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852402.11e-151PREDICTED: LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-104AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2I4H8B91e-150A0A2I4H8B9_JUGRE; LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A-like
STRINGevm.model.supercontig_1.1621e-110(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]