PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015823-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 349aa    MW: 38294.2 Da    PI: 8.964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015823-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.73.4e-20203265163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++elkrerrkq+NRe+ArrsR+RK+ae ee ++kv++L+aeN + ++e+++ ++++ kl+ e+
  WALNUT_00015823-RA 203 DRELKRERRKQSNRESARRSRLRKQAEAEEVARKVESLTAENASIRSEIDRVTEHSRKLRLEN 265
                         689*******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-30196IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.3E-14201262No hitNo description
SMARTSM003381.6E-18203267IPR004827Basic-leucine zipper domain
PfamPF001701.5E-18204265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.599205268IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-9206261No hitNo description
CDDcd147024.07E-20208259No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKHQEGKCS KSEKSSSTAT ADNTNQIHIH GHPDWAAMQA YYGPCVTLPP YYNPTVTSGH  60
AHPYMWGTPQ PVMPPYGASY ATIYPHGGVY AHPAVPLATV LLRALRVGLN IGCQRGSSFW  120
KETYEISYWS LCIVDDCEGK IETQASPVSA KDVNAAPDKA LCAIVTPSSV VSPGMGTSLE  180
PRNTTNMNSK TITTGVLLSC MNDRELKRER RKQSNRESAR RSRLRKQAEA EEVARKVESL  240
TAENASIRSE IDRVTEHSRK LRLENVSLME KLKNAQLGQT KEIILNSIDN KRRPLPVSTE  300
NLLSRVNNSG SIVQSTEEKS DMYENSSKSG AKLHQLLDAS PRADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225RRSRLRK
2219226RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813332.11e-147PREDICTED: common plant regulatory factor 1-like
SwissprotQ990891e-91CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2I4E1R51e-146A0A2I4E1R5_JUGRE; common plant regulatory factor 1-like
STRINGXP_010092905.11e-112(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.12e-57G-box binding factor 2
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]