PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015960-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 282aa    MW: 31353.2 Da    PI: 8.1031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015960-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05112131120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  WALNUT_00015960-RA 112 FSCTVCNKTFNRYNNMQMHM 131
                         89*****************9 PP
2zf-C2H212.40.00048197219123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C +Cgk F  + + k+H +++
  WALNUT_00015960-RA 197 YGCRKCGKAFAIRGDWKTHEKNC 219
                         67*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-591133No hitNo description
PROSITE profilePS5015710.367112139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-6112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128749.8E-5112131No hitNo description
SMARTSM003550.079112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355130160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.52E-7178217No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6184217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704197217IPR007087Zinc finger, C2H2
SMARTSM00355100197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQTPSFTACT SFSTTESESL EADENCIFLS LGPAPDVHIR KNPIYIPSAS NHTVRHQTTS  60
SSPHDQGDVS VALHVGPPSG SSYSNPNDIA APAVGQYWIP SPAQILAGPA QFSCTVCNKT  120
FNRYNNMQMH MWGHGSQYRK GPESLRGSKP SSSILRLPCY CCAEGCKNNI KQPRSKPLKD  180
FRTLQTHYKR MHGAKPYGCR KCGKAFAIRG DWKTHEKNCG KLWFCICSSN FKHKRSLKDH  240
VRAFGEGHAP HSMDQLCEGE EEEEAKDDED IENGGHGSVF FW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823668.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-111ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2I4EW880.0A0A2I4EW88_JUGRE; zinc finger protein WIP6-like
STRINGcassava4.1_026292m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-107C2H2-like zinc finger protein