PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015973-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 417aa    MW: 46319.7 Da    PI: 8.2348
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015973-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.12e-481262742133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 
                         +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt++ s+ +++c+++++s+s+ +++++    
  WALNUT_00015973-RA 126 TGKKDRHSKICTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKELTESISQVKQSCSDGTKSVSVTSDNEEisen 216
                         79**************************************************************888888996666666666555556689 PP

                 TCP  89 ...............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                        + ++++   ++++++++  l +a++sr karararertr+km+i+
  WALNUT_00015973-RA 217 veiagddgdqggfgaDVESFNLMAREKTNRKS--LIVARDSRDKARARARERTRNKMMIR 274
                         9999999*****96544444445555555555..9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.9E-44126272IPR005333Transcription factor, TCP
PROSITE profilePS5136937.71128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.916253270IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MFPCSSDHTP FTYSTCQSIL EKPFANDEKT SSGHEEEHPS SYTHLSASFL EDDELFLSHF  60
LSQQKLFFGS TSQAETENSV AASVKATNDK KEASGNTVAE QMPSKKPLPN KKSRGGAKQT  120
VPRKRTGKKD RHSKICTAHG PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFTKSK  180
TAIKELTESI SQVKQSCSDG TKSVSVTSDN EEISENVEIA GDDGDQGGFG ADVESFNLMA  240
REKTNRKSLI VARDSRDKAR ARARERTRNK MMIRGLEVSK QMSEGENPNN LGQLCSSIPV  300
EEAGEESSFR GQERKSSLQM VADQVEEPIN HLLEHQINYS VSINERFLGV IGAPRSSLIL  360
NHSRNVAASS GGNPTEDFPG FPVNWINNNN ANMQRSMKPS TGNVQLRIPG VQFPWVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823676.10.0PREDICTED: transcription factor TCP12
TrEMBLA0A2I4EW990.0A0A2I4EW99_JUGRE; transcription factor TCP12
STRINGEOY021517e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-34TCP domain protein 12