PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015996-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 342aa    MW: 38136.4 Da    PI: 8.6721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015996-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05169188120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  WALNUT_00015996-RA 169 FACSICNKTFNRYNNMQMHM 188
                         78*****************9 PP
2zf-C2H2163.3e-05253275123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  k + ++H +++
  WALNUT_00015996-RA 253 FMCRKCGKTFAVKGDWRTHEKNC 275
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-5160192No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-4169188IPR007087Zinc finger, C2H2
SMARTSM003550.081169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SMARTSM00355190216248IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.85E-6239273No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6249273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704253273IPR007087Zinc finger, C2H2
SMARTSM0035535253273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSLISRHGVD DNSSLRFRPP TFIEWLKPSP SSSSLSSSSS CSSTSSFSST SCSSSVTAPK  60
GQFVDQEITL QCLPLLSGFT ETKPLKEEDI GLQKEGFGIK EEKVKKVTVA LHIGLPNSGD  120
SDADDQKKIF HVKEEEPVKK SFNVACSFNA ESRFWIPTPA QILVGPMQFA CSICNKTFNR  180
YNNMQMHMWG HGSEFRKGPD SLKGTQPAAM LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL  240
QTHYKRKHGA KPFMCRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF  300
GKGHCPHPLL DGFDQDEKEC ITGSEDDDQL APSPAAFGHP SF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813853.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-121ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2I4E3940.0A0A2I4E394_JUGRE; zinc finger protein WIP3-like
STRINGXP_009342737.11e-168(Pyrus x bretschneideri)
STRINGXP_008391103.11e-168(Malus domestica)
STRINGEMJ083621e-168(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]