PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016004-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bZIP

Protein Properties

Length: 589aa MW: 65706.9 Da PI: 7.2108

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016004-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	280	315	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le +L+ WALNUT_00016004-RA 280 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLT 315 6889*************************8766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-8	272	323	No hit	No description
SMART	SM00338	2.0E-6	277	354	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	279	323	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-8	280	318	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	281	323	No hit	No description
PROSITE pattern	PS00036	0	284	299	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.4E-30	363	436	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MMQESQAFNK KQDDNSTQSA MNLLQLRTVE GQQKFLLMER NLNVAWSSFL DENENGLRWS 60 CMASHRVGPV GETGLSDSGP SNPHVPYSVF HGSNVPTSFI NQEGSAFDFR ELEEAIVLQG 120 VKIRNDEAKA PLFTGRPAAT LEMFPSWPMR FQTTPRVVVA SNFSPSLTNL LIFWFVLHQG 180 SSKSGGESTD SGSAVNTFSS KAEVQLESES PISNKASSSD HQAFDHQKHL QLQQQQIQQE 240 MANDRSRAGP SQNQSDVKAP QEKRKGSGGS SSTSEKQLDA KTLRRLAQNR EAARKSRLRK 300 KAYVQQLESS RMKLTHIEQD LQRARAQGLF LGGCGGAGGN LSSGAAIFDM EYARWLEDDH 360 RLMAELRTGL HAHLSDGDLR LIVEGYISHY DEIFRLKGVA AKSDVFHVIT GLWMTPAERC 420 FLWIGGFRPS DLIKMLIGQL EPLTEQQLVG IYRLQQSTQQ AEEALSQGQE QLQQSLIETI 480 AAAGPVIDGM QQMVVALGKL SNLEGFVRQA DNLRQQTLHQ LRHVLTIRQA ARCFLVIGEY 540 YGRLRALSSL WASRPRESLM SEDHNSCQTT ATDHLQIVHQ SAHNHFSTF

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MMQESQAFNK KQDDNSTQSA MNLLQLRTVE GQQKFLLMER NLNVAWSSFL DENENGLRWS  60
CMASHRVGPV GETGLSDSGP SNPHVPYSVF HGSNVPTSFI NQEGSAFDFR ELEEAIVLQG  120
VKIRNDEAKA PLFTGRPAAT LEMFPSWPMR FQTTPRVVVA SNFSPSLTNL LIFWFVLHQG  180
SSKSGGESTD SGSAVNTFSS KAEVQLESES PISNKASSSD HQAFDHQKHL QLQQQQIQQE  240
MANDRSRAGP SQNQSDVKAP QEKRKGSGGS SSTSEKQLDA KTLRRLAQNR EAARKSRLRK  300
KAYVQQLESS RMKLTHIEQD LQRARAQGLF LGGCGGAGGN LSSGAAIFDM EYARWLEDDH  360
RLMAELRTGL HAHLSDGDLR LIVEGYISHY DEIFRLKGVA AKSDVFHVIT GLWMTPAERC  420
FLWIGGFRPS DLIKMLIGQL EPLTEQQLVG IYRLQQSTQQ AEEALSQGQE QLQQSLIETI  480
AAAGPVIDGM QQMVVALGKL SNLEGFVRQA DNLRQQTLHQ LRHVLTIRQA ARCFLVIGEY  540
YGRLRALSSL WASRPRESLM SEDHNSCQTT ATDHLQIVHQ SAHNHFSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018813854.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2I4E378	0.0	A0A2I4E378_JUGRE; transcription factor TGA2.2-like isoform X1
STRING	EOY33449	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-178	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]