PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016115-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 225aa    MW: 24308.2 Da    PI: 9.6692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016115-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-202877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa a++aa+++++g
  WALNUT_00016115-RA 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAHAYDAAAREFRG 77
                        69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-142877IPR001471AP2/ERF domain
SMARTSM003802.5E-382891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-332886IPR001471AP2/ERF domain
CDDcd000182.44E-192885No hitNo description
SuperFamilySSF541711.5E-222886IPR016177DNA-binding domain
PROSITE profilePS5103224.0782885IPR001471AP2/ERF domain
PRINTSPR003674.3E-112940IPR001471AP2/ERF domain
PRINTSPR003674.3E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAIKVKDSLG VRKGSNIRRA TADDKEMHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAAHAYDA AAREFRGSKA KTNFPSPNDC SPTDRSPSQS STVESTSPKA EARGVSRLQE  120
MGGGSGFLGR PVAAPFPFLN QQAYVGGVVG SFSHVSPVLF VDALGRPEFV TQTYPIRFDP  180
SAVDFNLGMG SGVQSESDSS SVVDCKPRAR KELNLDLNLA PPVDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222585263ATERF1
3gcc_A5e-222585263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2230188e-43KT223018.1 Prunus persica ethylene responsive factor 9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814873.11e-165PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW499e-51ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2I4E6661e-164A0A2I4E666_JUGRE; ethylene-responsive transcription factor 4-like
STRINGXP_008455284.12e-63(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-33erf domain protein 9