PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016260-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 364aa    MW: 40752.2 Da    PI: 5.6821
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016260-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.6e-09450242
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        ++r C++++e  + l+C+ ++  lC  C  e+H+       Ht++pl
  WALNUT_00016260-RA  4 QKRLCDNCSEATALLYCRADSAKLCFLCDREIHSAnqlfskHTRSPL 50
                        6899*****************************66899999999886 PP
2zf-B_box26.71.1e-084892342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         + C+ ++  ++++fC + ++ lC++C  e H +      H+++pl
  WALNUT_00016260-RA 48 SPLCDACDFSPASIFCSTESSVLCQNCDWERH-NlslslvHNRRPL 92
                        689*****999*********************.6688899988775 PP
3CCT62.31.5e-21320362143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         R+ al+RYkeK+ktR+++K+irYesRK++AesR R+KGrF+k 
  WALNUT_00016260-RA 320 RDSALSRYKEKKKTRRYDKHIRYESRKVRAESRIRIKGRFAKM 362
                         899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.5E-16350IPR000315B-box-type zinc finger
PROSITE profilePS5011911.249350IPR000315B-box-type zinc finger
PfamPF006433.9E-7450IPR000315B-box-type zinc finger
CDDcd000216.84E-8650No hitNo description
PROSITE profilePS5011910.5524692IPR000315B-box-type zinc finger
PfamPF006432.5E-64891IPR000315B-box-type zinc finger
CDDcd000215.25E-54992No hitNo description
SMARTSM003360.25192IPR000315B-box-type zinc finger
PfamPF062037.3E-16320362IPR010402CCT domain
PROSITE profilePS5101714.624320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSPQKRLCDN CSEATALLYC RADSAKLCFL CDREIHSANQ LFSKHTRSPL CDACDFSPAS  60
IFCSTESSVL CQNCDWERHN LSLSLVHNRR PLEGFTGCPS VSDLMAIVGF EEVGNKALFL  120
SDENDDADEI SNFLVWDDAS HVFNFDDLIH STNSAHEFQA MGGPPLPKNR NAACGQYKED  180
ILSQLREMAK SEPNSNHEDA DAEPLINYQS LVPKQNVQPG HMCTGFAHDA EQIESPDFGA  240
GDFQWFSDGG QAANQFCISN SFKRSYIEES PVVPEKHSDI GGSVSHANDG NEAQSLHVII  300
SENSSALPKV SPHELNSQER DSALSRYKEK KKTRRYDKHI RYESRKVRAE SRIRIKGRFA  360
KMDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822151.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_018822152.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_018822153.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A2I4ERZ00.0A0A2I4ERZ0_JUGRE; zinc finger protein CONSTANS-LIKE 13-like
STRINGEMJ022771e-153(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.19e-95B-box type zinc finger protein with CCT domain