PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016321-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 202aa MW: 23041.4 Da PI: 9.8403

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016321-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.3e-32	123	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ WALNUT_00016321-RA 123 LDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGIHNHP 181 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.4E-33	109	181	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-28	115	182	IPR003657	WRKY domain
PROSITE profile	PS50811	28.679	118	183	IPR003657	WRKY domain
SMART	SM00774	5.3E-37	123	182	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	124	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEDQELPITP PPPPLLPTQN PPFFFLPSIP SSSLHPPLDS PQALMNPEID WVSLLISSGQ 60 VRLTDKKPMI ESANNSTMAG NIGTTVNEDR EKGYKDHKRK AGSMKKATRP RFAFQTRSKD 120 DILDDGYRWR KYGQKAVKNS IYPRSYYRCT HHTCSVKKQV QRLSKDTSIV VTTYEGIHNH 180 PCEKLMETLT PLLKQMHFLS AF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-25	113	180	7	74	Probable WRKY transcription factor 4
2lex_A	8e-25	113	180	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841224.1	1e-151	PREDICTED: probable WRKY transcription factor 24
TrEMBL	A0A2I4GBD0	1e-150	A0A2I4GBD0_JUGRE; probable WRKY transcription factor 24
STRING	Gorai.007G103600.1	1e-82	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	6e-57	WRKY DNA-binding protein 43