PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016345-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 280aa MW: 31885.9 Da PI: 8.0536

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016345-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.7	6.7e-12	64	125	2	67
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 +Y +YAk GF vr+++s++s ++g++ + t+vC ++g +++ ++ r+r+++r+ Cka+++ WALNUT_00016345-RA 64 YYMKYAKYKGFGVRRRNSRQS-DDGKVRWFTLVCVRQGIIKSQASN---VLRPRQTERVWCKARVN 125 8*************99998.8899************9888...89999*******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-9	64	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MQNVLQGGVD MASFVELSDN EYDEVVVDDV PDNDDGVEEP KVGEVVEEPK AGMTFSSEEE 60 VRSYYMKYAK YKGFGVRRRN SRQSDDGKVR WFTLVCVRQG IIKSQASNVL RPRQTERVWC 120 KARVNALKLE YPDDDSREST STSSPATPMD GTTGKVLSPL VVRSKGRPPS KRRTHPVEKA 180 LKKPSTRRRL PTTEMRSHLS REDRPNTNVS GTQHEAPQTQ VSWLHSQESQ VWTHAPDYFC 240 TPSTAPPPPV QAQPVYVFVY ILYIEYAFID VRFIPFKDIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	174	KRRTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018856702.1	2e-74	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018856703.1	2e-74	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4HKL6	5e-73	A0A2I4HKL6_JUGRE; protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-07	FAR1 family protein