PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016373-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 248aa    MW: 28612.6 Da    PI: 5.423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016373-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-131562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        r+ W++eEd++l+ ++k++G  +W + ++  g+ R++k+c++rw +yl
  WALNUT_00016373-RA 15 RNVWSPEEDQKLKAYIKRYGIWNWCRMPEAAGLARSGKSCRLRWMNYL 62
                        789*****************99************************97 PP
2Myb_DNA-binding543.9e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++e+de +++ +++lG++ W++Ia++++ gRt++++k++w+++l
  WALNUT_00016373-RA  68 RGNFSQEDDETILKWHELLGNR-WSAIAAKLP-GRTDNEIKNYWHSHL 113
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1861062IPR017930Myb domain
SuperFamilySSF466896.97E-2812109IPR009057Homeodomain-like
SMARTSM007172.3E-101464IPR001005SANT/Myb domain
PfamPF002492.6E-111562IPR001005SANT/Myb domain
CDDcd001672.00E-91862No hitNo description
Gene3DG3DSA:1.10.10.607.1E-221869IPR009057Homeodomain-like
PROSITE profilePS5129425.3263117IPR017930Myb domain
SMARTSM007173.5E-1667115IPR001005SANT/Myb domain
PfamPF002492.0E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2570116IPR009057Homeodomain-like
CDDcd001675.95E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVKTNSDGEK MPARRNVWSP EEDQKLKAYI KRYGIWNWCR MPEAAGLARS GKSCRLRWMN  60
YLRPDIKRGN FSQEDDETIL KWHELLGNRW SAIAAKLPGR TDNEIKNYWH SHLKKRSKIN  120
TSSSMTISQM VKSSEVEVNK NDSPGIQDLL LCDALILPNM DATKGILMST QMPINDISSS  180
RTDPAVEIVQ HIEENFSSSE TSDQNVLSIW EQPFSFQDMC ILETDPEFMV PATAMWLEEP  240
MYPYVYLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-251811610107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822668.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A2I4ETD60.0A0A2I4ETD6_JUGRE; transcription repressor MYB6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-51myb domain protein 15