PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016437-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 196aa MW: 20815.1 Da PI: 5.9406

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016437-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.9	3.9e-55	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdrflPian+srimkk+lP+nakiskdaketvqecvsefisf+ eas kcqrekrktingddllwa++tlGfe+yvepl++yl+kyre WALNUT_00016437-RA 23 REQDRFLPIANMSRIMKKALPTNAKISKDAKETVQECVSEFISFIIREASVKCQREKRKTINGDDLLWAMTTLGFEEYVEPLEIYLQKYRE 113 89*************************************************************************************** PP NF-YB 93 legek 97 +egek WALNUT_00016437-RA 114 MEGEK 118 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-53	17	129	IPR009072	Histone-fold
SuperFamily	SSF47113	3.11E-39	25	127	IPR009072	Histone-fold
Pfam	PF00808	1.3E-25	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.7E-19	56	74	No hit	No description
PRINTS	PR00615	5.7E-19	75	93	No hit	No description
PRINTS	PR00615	5.7E-19	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MADLDNELGG HNNNNANNDF SSREQDRFLP IANMSRIMKK ALPTNAKISK DAKETVQECV 60 SEFISFIIRE ASVKCQREKR KTINGDDLLW AMTTLGFEEY VEPLEIYLQK YREMEGEKSS 120 VGRQGEKDGG DGVAACGGGT GGVVSFGTSD NGGFNGVGGF YGGMYGGVMG HHHGHVYGSG 180 GSPHVGIGGS VIGKGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-45	23	113	2	92	Transcription factor HapC (Eurofung)
4g92_B	5e-45	23	113	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833238.1	1e-142	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	3e-67	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2I4FNN0	1e-141	A0A2I4FNN0_JUGRE; nuclear transcription factor Y subunit B-3-like
STRING	VIT_19s0015g00440.t01	8e-82	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-69	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]