PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016524-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 277aa    MW: 30708.2 Da    PI: 6.5489
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016524-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.18e-35101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d  ++++isw e+g++fvv+++ +fak++Lp  Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+
  WALNUT_00016524-RA  10 FLTKTYQLVDDLGTDDVISWGESGTTFVVWKTADFAKDLLPYCFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFSNENFKRGQKD 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  WALNUT_00016524-RA  92 LLSQIRRRKT 101
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.6E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-36799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-301099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3708.5E-4151184IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD LGTDDVISWG ESGTTFVVWK TADFAKDLLP YCFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF SNENFKRGQK DLLSQIRRRK TVNSAPAQVP VVGKSTGGGS  120
TSDSGEDLGS TSTFSPDSKN PESVETSKTT QVTDLSGENE KLKKNNEILS SELAQMKQQC  180
DELVAFLTGY LKVGTDQVNR IMRQGSCGSS RHGLFVEANG VDSDKDDVDK NNGTEETGES  240
LKLFGVWLNG DTDRKKRGRE EKMGFSGPQP KEMKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24510125131Heat shock factor protein 1
5d5v_B3e-24510125131Heat shock factor protein 1
5d5v_D3e-24510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813737.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-102HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2I4E2W40.0A0A2I4E2W4_JUGRE; heat shock factor protein HSF24-like
STRINGcassava4.1_013185m1e-130(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-87heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]