PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016539-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 335aa    MW: 36875.8 Da    PI: 9.9667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016539-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31264321359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  WALNUT_00016539-RA 264 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGDHNHS 321
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.3E-19215260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32250323IPR003657WRKY domain
PROSITE profilePS5081131.422257323IPR003657WRKY domain
SuperFamilySSF1182906.67E-27259323IPR003657WRKY domain
SMARTSM007741.0E-37262322IPR003657WRKY domain
PfamPF031061.5E-26264320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVDFIMEYR NNNKNSDFRA KMEDNAVQEA ASGLESVEKL IRLLSQSQQQ YLSSSSSSSS  60
SKPSMEMEMD CKAVADVAVS KFKKVISLLG RTRTGHARFR RAPLGSQIEG KEKASEPDRV  120
YYATPIQQIP PLPHHNLNNQ YQYSDSLMPK KGVIDRKDAS TTINFSYSAA TSFMSSLTGD  180
TDSKQPSCSS AFQITNLSQL SSVGKPPLSS STSLKRKCSS ETLGSGKCGG SSGRCHCSKK  240
RKLRMKRVVR VPAISLKMAD IPPDDFSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV  300
ERALDDPSML VVTYEGDHNH SLPVTDATSV ILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-222593231477Probable WRKY transcription factor 4
2lex_A8e-222593231477Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813734.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-100WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2I4E2V80.0A0A2I4E2V8_JUGRE; probable WRKY transcription factor 7 isoform X2
STRINGEMJ067511e-166(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-75WRKY DNA-binding protein 7