PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016728-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 364aa    MW: 41045.7 Da    PI: 5.0231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016728-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20122171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a+ kl+g
  WALNUT_00016728-RA 122 KFRGVRQRP-WGKWAAEIRDPV----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 171
                         89*******.**********63....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29121179IPR001471AP2/ERF domain
CDDcd000183.49E-33122178No hitNo description
SMARTSM003809.2E-39122185IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-21122179IPR016177DNA-binding domain
PROSITE profilePS5103223.406122179IPR001471AP2/ERF domain
PfamPF008471.5E-12122171IPR001471AP2/ERF domain
PRINTSPR003674.1E-10123134IPR001471AP2/ERF domain
PRINTSPR003674.1E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDQDQGILCP VKFTEHRNVT KKLTKPGHVV SDGHRKRQAV DPNAPRVVRI SVTDPDATDS  60
SSDEEDEVVF FFGRQRVKRY VNEINIESGC KTNAISKARK RPAGGSPTCR RPPKIAPTNG  120
RKFRGVRQRP WGKWAAEIRD PVRRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDASTNFVT  180
PPPPKEMPEV NVPSVSCDDS SDESLSHSHS LSSPTSVLHR YIAHSCSEEV QPTKQEKEQE  240
PEQQQQQQQQ ESIKKPVGKC KREKLDGEEV FRECQAEMSL SDDPGIADYL QLEFPSCYED  300
LFNYSEPSLL FEDPMPRDIP MDDFGLLFGD NRNESYGSSS MVNPNQGDDY FQDILLSSDP  360
LVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20120178362ATERF1
3gcc_A8e-20120178362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852072.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE35e-60CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2I4H7E30.0A0A2I4H7E3_JUGRE; ethylene-responsive transcription factor CRF4-like
STRINGXP_010097869.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-47cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]