PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016944-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 285aa    MW: 32111.3 Da    PI: 5.1385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016944-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1966114355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a+++ ++k++g
  WALNUT_00016944-RA  66 YRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDREARKIRG 114
                         9*******.**********8...545************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3265123IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2265123IPR016177DNA-binding domain
PROSITE profilePS5103223.53865122IPR001471AP2/ERF domain
SMARTSM003802.2E-4065128IPR001471AP2/ERF domain
PRINTSPR003677.1E-126677IPR001471AP2/ERF domain
CDDcd000187.38E-3466123No hitNo description
PfamPF008475.2E-1266114IPR001471AP2/ERF domain
PRINTSPR003677.1E-1288104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MCGGAMLSNL IPASDLLPNA ELNPFESNMS PVVQDVSSPL KRAQLPSGDV RGEAEKPSKR  60
QRKNLYRGIR QRPWGKWAAE IRDPGKGVRV WLGTFNTAEE AARAYDREAR KIRGKKAKVN  120
FPNEDENEVS YFTTTSQIQN QNHYNPPFVR SVPSFPDHHL RDNADLNNKY SRGSDFGFGH  180
DLNQIGGFSY SGFESVGESN TEPTIVSGNY NTYPSTALVC ANDQEAKAEE EEKEVNKTEE  240
EEREVQKLSE ELTEYENFMK FYQTPYYDGQ SAPPAPQYCS GKRCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2266122360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817988.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A2I4EF230.0A0A2I4EF23_JUGRE; ethylene-responsive transcription factor ERF113-like
STRINGEMJ016176e-83(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-32ERF family protein