PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016982-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

BBR-BPC

Protein Properties

Length: 233aa MW: 25421.3 Da PI: 10.6289

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016982-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	229.5	2.7e-70	72	233	136	301
GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +++ + ++ k++ k++++ k+ + k++kk++ k++k ++++ e ++++k ++ +++ ++D s++P+P CsCtG+ r CYkWG WALNUT_00016982-RA 72 DSATKPAKGRKLKNSVKGSNQVASKVFRPKQTKKTP-KTTKGKSMP---EGKREKKILNNIHMEKADFDFSRVPPPYCSCTGVARLCYKWG 158 222333333333444444444444444444444433.222222222...2345555567899*************************** PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +GGWqS+CCt+++S yPLP+s++r+gaR+agrKmS+ga+ klL +LaaeG dl +pvDLkdhWA+HGtnkfv i+ WALNUT_00016982-RA 159 AGGWQSSCCTINLSEYPLPMSSTRPGARVAGRKMSNGAYGKLLLRLAAEGCDLTHPVDLKDHWARHGTNKFVIIK 233 **********************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.0E-63	22	233	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.7E-65	77	233	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGTYSNRNPM IPEATAGASV PHFTWFYPGS FLSASKTSSN PFQGVQLNAQ PSLPVGPIRT 60 IAVTPEPVND IDSATKPAKG RKLKNSVKGS NQVASKVFRP KQTKKTPKTT KGKSMPEGKR 120 EKKILNNIHM EKADFDFSRV PPPYCSCTGV ARLCYKWGAG GWQSSCCTIN LSEYPLPMSS 180 TRPGARVAGR KMSNGAYGKL LLRLAAEGCD LTHPVDLKDH WARHGTNKFV IIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843904.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_018843905.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_018843906.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_018843907.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_018843908.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_018843909.1	1e-175	PREDICTED: protein BASIC PENTACYSTEINE7-like
Swissprot	O82286	1e-66	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A2I4GJ26	1e-173	A0A2I4GJ26_JUGRE; protein BASIC PENTACYSTEINE7-like
STRING	cassava4.1_015308m	1e-112	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16430	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	8e-66	basic pentacysteine 7