PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017122-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 344aa    MW: 37279.4 Da    PI: 4.5319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017122-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35291202102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k++++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fkkg+k 
  WALNUT_00017122-RA  29 FLIKTFQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKKGEKG 110
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  WALNUT_00017122-RA 111 LLRDIQRRKI 120
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.5E-3726118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.0E-4186211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAPLPVEQTG DSGPVQGSGE SQRSLPTPFL IKTFQLVDDP AVDDLISWNE DGSTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDCFKKGEKG LLRDIQRRKI  120
SPSTISVAAA ASAAVTVTVA AVPAVARTVS PSISADEQVI SSNSSPAAHA PAALLQRSSS  180
FTTTPELLEE NERLRKENSQ LSHELTQLRG LCNNIFSMMA NYASGQSDGG GGGGGGVSLP  240
EGKPLELMPA KQVTVTGETA LCSGAHKADE EVGTMPRLFG VSIGVKRARN EEAVEEEEDD  300
EEQEEREGQN REISQEKESG SDVKSEPLDG NSENKEAPWL ELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-252911810110Heat shock factor protein 1
5hdn_A1e-252911810110Heat shock factor protein 1
5hdn_B1e-252911810110Heat shock factor protein 1
5hdn_C1e-252911810110Heat shock factor protein 1
5hdn_D1e-252911810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811948.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_018811949.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-105HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2I4DXR40.0A0A2I4DXR4_JUGRE; heat stress transcription factor B-2b
STRINGcassava4.1_027702m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-87HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]