PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017188-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 549aa    MW: 59756.9 Da    PI: 9.8214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017188-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  WALNUT_00017188-RA 67 FICEICNKGFQRDQNLQLHRRGH 89
                        89*******************88 PP
2zf-C2H212.60.00041143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  WALNUT_00017188-RA 143 WKCEKCSKKYAVQSDWKAHSKTC 165
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.86E-76689No hitNo description
PfamPF121716.7E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035585108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.86E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLKMMSGDAF SLPSSIGAFA QEQNAIPNPK TDPNPATRKK RNLPGTPDPD AEVMALSPKT  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTN KEVRKKVYIC PEKSCVHHDP  120
SRALGDLTGI KKHYSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALADESVR LTSLAATNLS FRNDSLNETV INPQPGLPHG LSGRGVQDAA  240
GISQFAPVFR ADFNGMAIGS SLGLDQQKPR LSLWLNQANS QVNSSHDMVT GTHLYGSSCS  300
TGFPDMVQAA ASTNLFNSSS VANFVNFNQF QAFDKSVPTS ANATVSLTAP PNELKGEGAG  360
SKGNLVETLS SIYSDSQNKP SKPATPLSAT ALLQKAAQMG STTSNPSLFC SSFGVMSSSS  420
SSATSFDTLN QNRNELHQVF QNSRQPENFR SAGSLARADG MSSSSNLISL TSSSSNSFDQ  480
LMMQTSTGTQ NEQVPLKYHR GSKGIENSLT RDFLGVGRRE SQRSFLPQEL ANFASMGSAM  540
GLSQFNGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-38139208372Zinc finger protein JACKDAW
5b3h_F7e-38139208372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193105KLRQRTNKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847791.10.0PREDICTED: zinc finger protein JACKDAW-like
TrEMBLA0A2I4GV620.0A0A2I4GV62_JUGRE; zinc finger protein JACKDAW-like
STRINGVIT_08s0040g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-112C2H2-like zinc finger protein