PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017194-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 549aa    MW: 59801.1 Da    PI: 9.6392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017194-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056587123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  WALNUT_00017194-RA 65 FICEICNKGFQRDQNLQLHRRGH 87
                        89*******************88 PP
2zf-C2H212.60.00041141163123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  WALNUT_00017194-RA 141 WKCEKCSKKYAVQSDWKAHSKTC 163
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.0E-76487No hitNo description
PfamPF121716.7E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.0E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MMSGDSFSLP SAIGAFAQEQ TTNPNPKPDP NNPAVKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE VRKKVYICPV KACVHHDPLR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALADESARFT SLSATNLNFR NDSLNETVVD PQRGLPHGLS VRGVQDGGGM  240
APFFPGFRPD FNSMAIGSSL GMDHQTPRLS LWLNQANSQF NPNEMVANPH LYASSSNSTG  300
FPEIVQATSA NLFGSSSMAN FGNFSQFQGT FDKSVPSSAN ATLSLTAPPQ EMKEEGGNKG  360
DLVETLSPLY SDSLNKQSKP ASPLSATALL QKAAQMGSTR SNPSLFCSSF GVMSSSSSST  420
TSFNTLNQNR NELHQVFQNA KQPENFTETG TVPMADGILG SSSNSISLTS PSNSFEHLMM  480
QSTSSGIQNE AVPLKNHRGS KGIDQNSLTR DFLGMGAGRE SQRPFLAQEL AKFASLGSAM  540
GLSQFTGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-38137206372Zinc finger protein JACKDAW
5b3h_F2e-38137206372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLKQRTNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847796.10.0PREDICTED: zinc finger protein JACKDAW-like
TrEMBLA0A2I4GV640.0A0A2I4GV64_JUGRE; zinc finger protein JACKDAW-like
STRINGVIT_08s0040g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-106C2H2-like zinc finger protein