PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017267-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 745aa MW: 84174.2 Da PI: 7.8643

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017267-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.2	5.2e-116	372	743	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cAeav +dl+ a++lL+++++++sp+gd qRla++f++AL+arl++s+se+y+al++++ s s ++a++l+ ++P++ WALNUT_00017267-RA 372 LRSLLMHCAEAVGGNDLKGANELLSQIRQHSSPSGDGSQRLAHCFANALEARLVGSGSEVYAALAAKNIS---SLYIFQAFRLLLSACPFM 459 689*************************************************************9999...99999********* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s + a q+I++ ++++++Hii f+i +G+QWp L+q L++Rp+gpp lRiTg++ p++g + ++eetg+rLa+++e+++vpfe+n+ WALNUT_00017267-RA 460 RMSTFFATQTIMDLSQKATKLHIIHFGILYGFQWPELIQNLSERPGGPPVLRITGIDFPQPGsrPAARIEETGRRLASYCERFKVPFEYNA 550 *********************************************************999999******************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e+++le+L+++++E+++Vn+ +q +l de+v l+s+rd+vLkl+k ++P+v+++ + ++n++ F rf eal+y+salfd+l WALNUT_00017267-RA 551 -IAQKWETIQLEDLKINRDEVIVVNCLYQFRYLQDETVVLSSHRDTVLKLIKMIKPDVFIHGIVNGSYNAPFFTSRFREALHYFSALFDML 640 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +a+l re+++r++ E+e+ g+e+ nv+aceg++r+er et+++W+ r +aG++++pl+++++k++++ ++ ++ + + v+e+++++++gW WALNUT_00017267-RA 641 DANLRREDQDRMVFEQEIYGKEVLNVIACEGEKRVERPETYKQWQVRNLRAGLRQLPLNQEIMKKVETQVKLCYHKDFLVDEDRHWMLQGW 731 **********************************************************************889********** PP GRAS 363 kdrpLvsvSaWr 374 k+r L ++S+W+ WALNUT_00017267-RA 732 KGRILCALSCWK 743 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.846	346	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-113	372	743	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MSILVDDSCL FKEARALLLR ARAHALAIPS GFSEALVNLY LPSNMSSTRG HHSEQSDSPV 60 AVLNYISQIL MEEGLEGATC RFPDAALQAA EKPFYDVLGE KYPSLINQIP SHQNRVSTVN 120 KCNCFCNYYG CKSIVHANKA IESSLICDLS QQKSSCVIAS PAEFPFQSNF QSNSLSCLQS 180 ISLPSNFGNN INGSAPPLCT PLAPGSIRGS QLFLQPKDVI KETWGFLPHG RKHDSILSFE 240 NNRLFPLELM EKNPESVVHA AEKGKRDHSP GGMEWKEMIT STIINSSVDE PRSWRNKHLA 300 LNNEAPERSE MFEKLLLFSS TEEDEFETYT LQALMQNGRG TMLHQAGKQK GARNGRTTGK 360 KERANKRDLV DLRSLLMHCA EAVGGNDLKG ANELLSQIRQ HSSPSGDGSQ RLAHCFANAL 420 EARLVGSGSE VYAALAAKNI SSLYIFQAFR LLLSACPFMR MSTFFATQTI MDLSQKATKL 480 HIIHFGILYG FQWPELIQNL SERPGGPPVL RITGIDFPQP GSRPAARIEE TGRRLASYCE 540 RFKVPFEYNA IAQKWETIQL EDLKINRDEV IVVNCLYQFR YLQDETVVLS SHRDTVLKLI 600 KMIKPDVFIH GIVNGSYNAP FFTSRFREAL HYFSALFDML DANLRREDQD RMVFEQEIYG 660 KEVLNVIACE GEKRVERPET YKQWQVRNLR AGLRQLPLNQ EIMKKVETQV KLCYHKDFLV 720 DEDRHWMLQG WKGRILCALS CWKTA

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MSILVDDSCL FKEARALLLR ARAHALAIPS GFSEALVNLY LPSNMSSTRG HHSEQSDSPV  60
AVLNYISQIL MEEGLEGATC RFPDAALQAA EKPFYDVLGE KYPSLINQIP SHQNRVSTVN  120
KCNCFCNYYG CKSIVHANKA IESSLICDLS QQKSSCVIAS PAEFPFQSNF QSNSLSCLQS  180
ISLPSNFGNN INGSAPPLCT PLAPGSIRGS QLFLQPKDVI KETWGFLPHG RKHDSILSFE  240
NNRLFPLELM EKNPESVVHA AEKGKRDHSP GGMEWKEMIT STIINSSVDE PRSWRNKHLA  300
LNNEAPERSE MFEKLLLFSS TEEDEFETYT LQALMQNGRG TMLHQAGKQK GARNGRTTGK  360
KERANKRDLV DLRSLLMHCA EAVGGNDLKG ANELLSQIRQ HSSPSGDGSQ RLAHCFANAL  420
EARLVGSGSE VYAALAAKNI SSLYIFQAFR LLLSACPFMR MSTFFATQTI MDLSQKATKL  480
HIIHFGILYG FQWPELIQNL SERPGGPPVL RITGIDFPQP GSRPAARIEE TGRRLASYCE  540
RFKVPFEYNA IAQKWETIQL EDLKINRDEV IVVNCLYQFR YLQDETVVLS SHRDTVLKLI  600
KMIKPDVFIH GIVNGSYNAP FFTSRFREAL HYFSALFDML DANLRREDQD RMVFEQEIYG  660
KEVLNVIACE GEKRVERPET YKQWQVRNLR AGLRQLPLNQ EIMKKVETQV KLCYHKDFLV  720
DEDRHWMLQG WKGRILCALS CWKTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-53	378	742	25	378	Protein SCARECROW
5b3h_A	4e-53	378	742	24	377	Protein SCARECROW
5b3h_D	4e-53	378	742	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850477.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2I4H2V7	0.0	A0A2I4H2V7_JUGRE; scarecrow-like protein 14
STRING	XP_010256894.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-180	SCARECROW-like 14