PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017402-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 396aa    MW: 43521 Da    PI: 6.6534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017402-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20182231255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa+a+++a+++++g
  WALNUT_00017402-RA 182 RYRGVRQRP-WGKWAAEIRDpF-----KaCRVWLGTFDTAEAAARAYDEAALRFRG 231
                         7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-14182231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32182240IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22182240IPR016177DNA-binding domain
PROSITE profilePS5103225.435182239IPR001471AP2/ERF domain
SMARTSM003808.3E-37182245IPR001471AP2/ERF domain
PRINTSPR003672.1E-11183194IPR001471AP2/ERF domain
CDDcd000188.71E-15190241No hitNo description
PRINTSPR003672.1E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MPKVAEKRER TRVGEVEETQ QVDELLFYEP NYQYPTTTES AAILVPMLSE VSREKEMSAM  60
VSALTHVVSG GDQVPVGLIR DEYCSGLNPN VSDSPYSWHI DGVGQKRGRD QEEGGGVGEL  120
CEQVSRRFRA FGDFTHGGGS SSGVRATESS SVGRSTGTQT RTELTPKYEY SKENYTEEPR  180
RRYRGVRQRP WGKWAAEIRD PFKACRVWLG TFDTAEAAAR AYDEAALRFR GNKAKLNFPE  240
NVTLQQPSAN SPSTQLIISG SPNTLSAIPT STDPIVHYPQ ALDHFHGSDH QPSRKFLDYS  300
HQLVDSQRQA MSPYDQMVLS SSMASHFLLS PSSISSSSLA SSVSSSSSSS SPTPSFSMFF  360
PTQTAVHLRP VTSHSAGPDF PAPAWSDPGH RKSPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22181242163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9804471e-98KM980447.1 Betula platyphylla ethylene response factor protein 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846217.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2I4GQQ50.0A0A2I4GQQ5_JUGRE; ethylene-responsive transcription factor ABR1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.18e-25ERF family protein