PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017448-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 110aa    MW: 12509.3 Da    PI: 6.2263
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017448-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.21.9e-262179260
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
        HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                        Flkkly +++d+e+++++sws+  nsfvv++++efa+k+Lpk+Fkh+nfaSF+RQLn+Y
  WALNUT_00017448-RA 21 FLKKLYAMVDDPETDSVVSWSNGDNSFVVWNPHEFASKLLPKHFKHNNFASFIRQLNTY 79
                        9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-281279IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-2317109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-241979IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-232179IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-152144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-155971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-157284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MADANDAGSS TTATTNPLPP FLKKLYAMVD DPETDSVVSW SNGDNSFVVW NPHEFASKLL  60
PKHFKHNNFA SFIRQLNTYV GYLYLFFYLL SLLFFLLFLC KMLGLISESN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-198791787Heat shock factor protein 1
5d5v_B3e-198791787Heat shock factor protein 1
5d5v_D3e-198791787Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847277.13e-51PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ9SCW59e-30HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A2I4GTQ97e-50A0A2I4GTQ9_JUGRE; heat stress transcription factor A-1b-like
STRINGBra001071.1-P5e-30(Brassica rapa)
STRINGPGSC0003DMT4000827525e-30(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-30heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]