PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017543-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LSD

Protein Properties

Length: 159aa MW: 17389.8 Da PI: 4.6195

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017543-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.1	3.3e-14	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V+C++CdtV WALNUT_00017543-RA 42 CGSCRHLLKYPRGARHVKCSCCDTV 66 ************************9 PP
2	zf-LSD1	39.2	1.1e-12	108	132	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sV C++C +V WALNUT_00017543-RA 108 CGSCEVLLMYPYGASSVMCSSCTFV 132 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.5E-18	39	69	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-11	42	66	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.6E-11	105	133	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-10	108	132	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MESKEVEAEE DEGPPPGWQS IPLPSSQSPL QPPLSEMAQM VCGSCRHLLK YPRGARHVKC 60 SCCDTVNLVL EDHMPMCITK VLIGDMSDTM SQDLSEVGST HEVGQVNCGS CEVLLMYPYG 120 ASSVMCSSCT FVTEITEHNR RPPWSVQQGQ PPSPPKPVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018820173.1	3e-85	PREDICTED: protein LOL2 isoform X2
Swissprot	O65426	2e-38	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2I4EL98	8e-84	A0A2I4EL98_JUGRE; protein LOL2 isoform X2
STRING	XP_004163439.1	2e-49	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-37	lsd one like 2