PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017547-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 206aa    MW: 23627.9 Da    PI: 9.7375
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017547-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33251262103
                         HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
        HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                         Fl+k+y++le         d++ k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk+++++         weFkh
  WALNUT_00017547-RA  25 FLSKTYDLLEegradddhhDRAGKRIVSWNAEGTGFVVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKH 106
                         9*********88887777767999*************************************************9998.........***** PP

                         SXXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  84 ksFkkgkkellekikrkkse 103
                         ++Fkkg +++l +i rkkse
  WALNUT_00017547-RA 107 EKFKKGCRQMLAEITRKKSE 126
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3416117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-4021123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-2622123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-2925123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEQEGTSKST ASSSQSPRSR CPAPFLSKTY DLLEEGRADD DHHDRAGKRI VSWNAEGTGF  60
VVWSPAEFSE LLLPKYFKHN NFSSFIRQLN TYGFKKTSSK RWEFKHEKFK KGCRQMLAEI  120
TRKKSEPSIF PAYLKASEES SKMTAACMEE TNRLLLLKEN KDLRREKVEL QMQIAHFKAL  180
ELKLLDCLSQ YMGPGETTTR TKLGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-17211252107Heat shock factor protein 2
5d8l_B4e-17211252107Heat shock factor protein 2
5d8l_D4e-17211252107Heat shock factor protein 2
5d8l_F4e-17211252107Heat shock factor protein 2
5d8l_H4e-17211252107Heat shock factor protein 2
5hdk_A4e-17211257112Heat shock factor protein 2
5hdk_B4e-17211257112Heat shock factor protein 2
5hdk_C4e-17211257112Heat shock factor protein 2
5hdk_D4e-17211257112Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820155.11e-153PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A2I4EL761e-151A0A2I4EL76_JUGRE; heat stress transcription factor B-2a-like
STRINGEMJ133037e-97(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-40heat shock transcription factor B2A