PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017815-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 245aa    MW: 27840.5 Da    PI: 4.6807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017815-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.5e-1457100755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++Lq
  WALNUT_00017815-RA  57 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIEYIQELQ 100
                         57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2855099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1852114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-1453104No hitNo description
SMARTSM003538.0E-1656105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1856114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1257100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNISEEYTQ YRHYWETNMF LHSEELDSWG LDEAFSGDYD SSSPDGAASS LASKNIVSER  60
NRRKKLNDRL FALRAVVPNI SKMDKASIIK DAIEYIQELQ EQERRIQAEI TELESGKLNE  120
NPGYDFEEEL PVLLRSKKKK TDQFYESGGS RTSPIEVLEL RAIYMGEKTV VVSLTCSKRT  180
DTMVKLCEVF ESLKLKIITA TIAAFSGRLV KTVFVEADEG EKDQLKFKIE TAIAALNDPQ  240
SPMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1355100954Transcription factor MYC2
5gnj_B1e-1355100954Transcription factor MYC2
5gnj_E1e-1355100954Transcription factor MYC2
5gnj_F1e-1355100954Transcription factor MYC2
5gnj_G1e-1355100954Transcription factor MYC2
5gnj_I1e-1355100954Transcription factor MYC2
5gnj_M1e-1355100954Transcription factor MYC2
5gnj_N1e-1355100954Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX987554e-48X98755.1 Quercus petraea/Quercus robur mixed clone library DNA microsatellite ga36.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836607.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV92e-92BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2I4FY831e-180A0A2I4FY83_JUGRE; transcription factor bHLH35-like
STRINGXP_009348093.11e-150(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-84bHLH family protein