PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018201-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 463aa    MW: 51862.7 Da    PI: 6.1952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018201-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19215265256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  WALNUT_00018201-RA 215 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 265
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-33214274No hitNo description
SMARTSM003801.4E-39215278IPR001471AP2/ERF domain
PROSITE profilePS5103222.932215272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-32215273IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22215273IPR016177DNA-binding domain
PRINTSPR003679.9E-11216227IPR001471AP2/ERF domain
PfamPF008472.5E-12216265IPR001471AP2/ERF domain
PRINTSPR003679.9E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MASKNSGKSK MGVDESQKMN QDWEIDKGKD LDFSSERRRW KPVFEDASMS NRPLKKIRSP  60
ERQDPIMSSA SLSHQPPTFS IPSSPSPTST SSLTLCPPSR IVFPFAFDGS QQSFQYPHQF  120
SATLPMYHPP PLQVPQNQQD MISFTSNQQH NIAYPPFLGG DAALMHPQQH QHLLQYWSDA  180
LNLSPRGRML MMNRLGPDGR PLFRPPLQPL NTTKLYRGVR QRHWGKWVAE IRLPRNRTRL  240
WLGTFDTAED AALAYDREAF KLRGENARLN FPELFLKQDK AASTEPSSTT SSPSTPHASS  300
RPTRYSKQPE QAPEGRDFQA LNMELMPPPP LPQPPLQTRE DNPDGDSGLG SSEAAASDEI  360
QAITAGADVG EGVSQSQELV WGDMQEAWFN AIAAGGWGPG SPVWDDLDTT NNLLLQTQLP  420
FANRNQQEFN DSDLQRQQEN LTSASSSSSS SCPMKPFFWK DHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20214272160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20214272463ATERF1
3gcc_A2e-20214272463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850912.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2I4H4440.0A0A2I4H444_JUGRE; ethylene-responsive transcription factor ERF054-like
STRINGEOX993820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-53ERF family protein